Site menu:
Publications
Below is a largely complete list of my publications since 1997. You can also find details of most of my papers since 2001 in the Kent Academic Repository. And my Orcid page has a list of almost all of my publications, dating back to 1985.
2021
Johnson, C.A., McGreig, J.E., Jeanfavre, S.T., Walklate, J., Vera, C.D., Farre, M., Mulvihill, D.P., Baines, A.J., Ridout, M.S., Leinwand, L.A., Wass, M.N. & Geeves, M.A. (2021) Identification of sequence changes in myosin II that adjust muscle contraction velocity. PLoS Biol 19(6): e3001248. doi: 10.1371/journal.pbio.3001248 [pdf]
2020
Jourdain, N.O.A.S., Cole, D.J., Ridout, M.S. & Rowcliffe, J.M. (2020) Statistical development of animal density estimation using random encounter modelling. Journal of Agricultural, Biological, & Environmental Statistics, 25, 148-167. doi: 10.1007/s13253-020-00385-4 [preprint pdf]
Lojanapiwat, N., Islam, M.R., Ridout, M. & Subramaniam, S. (2020). Modified Glasgow Prognostic Score (mGPS) for prognostication of adult oncology patients With palliative intent in a regional Victorian hospital, Australia. American Journal of Hospice & Palliative Medicine, 38, 766-771. doi: 10.1177/1049909120958389
2019
Subramaniam, S., Dand, P., Ridout, M. Cawley, D., Miller, S., Valli, P., Bright, R., O'Neill, B., Wilcocks, T., Parker, G. & Harris, D. (2019). Prognosis prediction with two calculations of Palliative Prognostic Index: further prospective validation in hospice cancer patients with multicentre study. BMI Supportive & Palliative Care, 9, 326-331. doi: 10.1136/bmjspcare-2017-001418
2017
Barata, I.M., Griffiths, R.A. & Ridout, M.S. (2017)
The power of monitoring: optimizing survey designs to detect occupancy changes in a rare amphibian population.
Scientific Reports, 7, 1-9.
doi: 10.1038/s41598-017-16534-8
[pdf]
Dennis, E.B., Morgan, B.J.T., Freeman, S.N., Ridout, M.S., Brereton, T.M., Fox, R., Powney, G.D. & Roy, D.B. (2017)
Efficient occupancy model-fitting for extensive citizen-science data.
PLoS ONE, E-ISSN 1932-6203.
doi: 10.1371/journal.pone.0174433
[pdf]
Veríssimo, D., Vaughan, G., Ridout, M.S., Waterman, C., MacMillan, D.C., Smith, R.J. (2017) Increased conservation marketing effort has major fundraising benefits for even the least popular species. Biological Conservation, 211, 95-101. doi: 10.1016/j.biocon.2017.04.018 [journal link, preprint pdf]
2016
Brown, P.J., Ridout, M.S. (2016) Level-screening designs for factors with many levels. The Annals of Applied Statistics, 10, 864-883. doi: 10.1214/16-AOAS916 [pdf, supplementary material]
Hinsley, A., Nuno, A., Ridout, M.S., St. John, F.A.V., Roberts, D.L. (2016) Estimating the extent of CITES noncompliance among traders and end-consumers; lessons from the global orchid trade. Conservation Letters, 10, 602-609. doi: 10.1111/conl.12316 [pdf]
2015
Dennis, E.B., Morgan, B.J.T., Ridout, M.S. (2015) Computational aspects of N-mixture models. Biometrics, 71, 237-246. doi: 10.1111/biom.12246 [pdf]
2014
Guillera-Arroita, G., Ridout, M.S., Morgan, B.J.T. (2014)
Two-stage sequential Bayesian study design for species estimation.
Journal of Agricultural, Biological, and Environmental Statistics, 19, 278-291.
doi: 10.1007/s13253-014-0171-4
2013
Inskip, C., Ridout, M.S., Fahad, Z., Tully, R., Barlow, A., Barlow, C.G., Islam, M.A., Roberts, T., MacMillan, D.C. (2013) Human-Tiger conflict in context: risks to lives and livelihoods in the Bangladesh Sundarbans. Human Ecology, 41, 169-186.< doi: 10.1007/s10745-012-9556-6 [pdf]
Ridout, M.S. (2013) An Improved Threshold Approximation for Local Vote Decision Fusion. IEEE Transactions on Signal Processing, 61, 1104-1106. doi: https://doi.org/10.1109/TSP.2012.2235435
2012
Ridout, M.S. (2012) Contribution to the discussion of 'Optimum design of experiments for statistical inference (with Discussion)', by S.G. Gilmour & L.A. Trinca. Journal of the Royal Statistical Society, Series C, 61, 376-377. doi: 10.1111/j.1467-9876.2011.01000.x
Guillera-Arroita, G., Ridout, M.S. Morgan, B.J.T., & Linkie, M. (2012) Models for species-detection data collected along transects in the presence of abundance-induced heterogeneity and clustering in the detection process. Methods in Ecology and Evolution, 3, 358-367. doi: 10.1111/j.2041-210X.2011.00159.x [pdf]
2011
Linkie, M. & Ridout, M. S. (2011) Assessing tiger-prey interactions in Sumatran rainforests. Journal of Zoology, 284, 224-229. doi: 10.1111/j.1469-7998.2011.00801.x [pdf] [web page]
Guillera-Arroita, G., Ridout, M.S. Morgan, B.J.T. & Linkie, M. (2011) Species occupancy modelling for detection data collected along a transect. Journal of Agricultural, Biological and Environmental Statistics, 16, 301-317. doi: 10.1007/s13253-010-0053-3 [pdf, erratum]
Miller, D., Morgan, B.J.T., Ridout, M.S., Carey, P.D. & Rothery, P. (2011) Methods for explicit perturbation analysis. Methods in Ecology and Evolution, 2, 283-288. doi: 10.1111/j.2041-210X.2010.00074.x [pdf] [software]
Ridout, M.S. Giagos, V., Morgan, B.J.T., Naeimi, W., von der Haar, T. & Tuite, M.F. (2011) Modelling prion dynamics in yeast. Invited paper, 58th World Statistics Congress of the International Statistical Institute (ISI), Dublin, Ireland, 21-26 August 2011. [pdf]
Palmer, K.J., Ridout, M.S. & Morgan, B.J.T. (2011)
Kinetic models of guanidine hydrochloride-induced curing of the yeast [PSI+]
prion.
Journal of Theoretical Biology, 274, 1-11.
doi: 10.1016/j.jtbi.2010.12.026
[prion web pages]
2010
Gurutzeta G-A., Ridout, M.S. & Morgan, B.J.T. (2010) Design of occupancy studies with imperfect detection. Methods in Ecology and Evolution, 1, 131-139. doi: 10.1111/j.2041-210X.2010.00017.x [pdf, correction] [SODA software (Matlab)]
2009
Ridout, M.S. (2009) Generating random numbers from a distribution specified by its Laplace transform. Statistics and Computing, 19, 439-450. doi: 10.1007/s11222-008-9103-x [pdf] [software]
Ridout, M.S. and Linkie, M. (2009)
Estimating overlap of daily activity patterns from camera trap data.
Journal of Agricultural, Biological and Environmental Statistics, 14, 322-337.
doi: 10.1198/jabes.2009.08038
[pdf]
[web page]
Ridout, M.S. (2009) Statistical applications of the complex-step method of numerical differentiation. The American Statistician, 63, 66-74. doi: 10.1198/tast.2009.0013 [software]
Byrne, L.J., Cole, D.J., Cox, B.S., Ridout, M.S., Morgan, B.J.T. & Tuite, M.F. (2009) The number and transmission of [PSI+] prion seeds (propagons) in the yeast Saccharomyces cerevisiae. PLoS ONE 4: e4670. doi: 10.1371/journal.pone.0004670 [pdf]
2008
Ridout, M.S. (2008) Computational methods for yeast prion curing curves. Mathematical Biosciences, 215, 152-157. doi: 10.1016/j.mbs.2008.07.008
Palmer, K.J., Ridout, M.S. and Morgan, B.J.T. (2008) Modelling cell generation times using the tempered stable distribution. Applied Statistics, 57, 379-397. doi: 10.1111/j.1467-9876.2008.00625.x [software]
Morgan, B.J.T. and Ridout, M.S. (2008) A new mixture model for capture heterogeneity. Applied Statistics, 57, 433-446. doi: 10.1111/j.1467-9876.2008.00620.x [web page]
Hughes, K.A., Waluda, C.M., Stone, R.E. and Ridout, M.S. (2008)
Short-term responses of king penguins Aptenodytes patagonicus to helicopter disturbance at
South Georgia. Polar Biology, 31, 1521-1530.
doi: 10.1007/s00300-008-0492-2
Rhodes, A., Aw, T.C., Allender, C.J. and Ridout, M.S. (2008) Immunisation status of dental practice staff in Kent. British Dental Journal, 205 (10), E20. doi: 10.1038/sj.bdj.2008.999
Morgan, B.J.T. and Ridout, M.S. (2008) Estimating N: a robust approach to capture heterogeneity. In: Thomson, D.L. and Cooch, E.G. and Conroy, M.J., eds. Modelling Demographic Processes in Marked Populations. Environmental and Ecological Statistics. Springer, New York, pp. 1069-1080. ISBN 978-0-387-78150-1. doi: 10.1007/978-0-387-78151-8_49 [web page]
2007
Morgan B.J.T., Palmer, K.J. and Ridout, M.S. (2007) Negative score test statistic. The American Statistician, 61, 285-288. doi: 10.1198/000313007X242972
Byrne L.J., Cox B.S., Cole D.J., Ridout M.S., Morgan B.J.T. &
Tuite M.F. (2007) Cell division is essential for elimination of the
yeast [PSI+] prion by guanidine hydrochloride. Proceedings of the
National Academy of Sciences of the United States of America,
104, 11688-11693.
doi: 10.1073/pnas.0701392104
[pdf]
[prion web pages]
Cole D.J., Ridout M.S., Morgan B.J.T., Byrne L.J. & Tuite M.F. (2007) Approximations for expected generation number. Biometrics, 63, 1023-1030. doi: 10.1111/j.1541-0420.2007.00780.x [prion web pages]
Ridout M.S., Wan, Y. & Xu X.-M. (2007) Sampling schemes for estimating spikelet incidence of Fusarium head blight. Annals of Applied Biology, 151, 341-347. doi: 10.1111/j.1744-7348.2007.00174.x
2006
Ridout M.S., Cole D.J., Morgan B.J.T., Byrne L.J. & Tuite M.F. (2006) New approximations to the Malthusian parameter. Biometrics, 62, 1216-1223. doi: 10.1111/j.1541-0420.2006.00564.x [prion web pages]
Ridout M.S., Faddy M.J. & Solomon M.G. (2006) Modelling the effects of repellent chemicals on foraging bees. Applied Statistics, 55, 63-75. doi: 10.1111/j.1467-9876.2005.00530.x
2005
Cole D.J., Morgan B.J.T. & Ridout M.S. (2005) Models for strawberry inflorescence data. Journal of Agricultural, Biological and Environmental Statistics, 10, 411-423. doi: 10.1198/108571105X80761 [pdf] [web page]
Morris D.L. & Ridout M.S. (2005) Models for microbiological colony counts. Journal of Agricultural, Biological, and Environmental Statistics, 10, 158-169. doi: 10.1198/108571105X46011 [pdf] [web page]
Smith D.M. & Ridout M.S. (2005) Algorithms for finding locally
and Bayesian optimal designs for binary dose-response models with
control mortality. Journal of Statistical Planning & Inference,
133, 463-478.
doi: 10.1016/j.jspi.2004.01.017
Xu X.-M. Ridout M.S. & Tobutt K.R. (2003) Single-locus gametophytic incompatibility in autotetraploids. Journal of Heredity, 96, 430-433. doi: 10.1093/jhered/esi063
2004
Cole D.J., Morgan B.J.T., Ridout M.S., Byrne L.J. & Tuite M.F.
(2004) Estimating the number of prions in yeast cells.
Mathematical Medicine & Biology, 21, 369-395.
doi: 10.1093/imammb/21.4.369
[prion web pages]
Li B.-H., Xu X.-M. & RIDOUT, M.S. (2004) Modelling the establishment
and spread of autotetraploid plants in a spatially heterogeneous
environment. Journal of Evolutionary Biology, 17, 562-573.
doi: 10.1111/j.1420-9101.2004.00700.x
Ridout M.S. & Besbeas P. (2004) An empirical model for underdispersed count data. Statistical Modelling, 4, 77-89. doi: 10.1191/1471082X04st064oa
2003
Cole D.J., Morgan B.J.T. & Ridout M.S. (2003) Generalized linear mixed models for strawberry data. Statistical Modelling, 3, 273-290. doi: 10.1191/1471082X03st060oa [web page]
Morgan B.J.T., Ridout M.S. & Ruddock L.W. (2003) Models for yeast
prions. Biometrics, 59, 562-569.
doi: 10.1111/1541-0420.00066
[prion web pages]
Ridout M.S. (2003) On ranked set sampling for multiple characteristics. Environmental & Ecological Statistics, 10, 255-262. doi: https://doi.org/10.1023/A:1023694729011 [pdf] [web page]
Smith D.M. & Ridout M.S. (2003) Optimal designs for criteria
involving log(potency) in comparative binary bioassays.
Journal of Statistical Planning & Inference, 113, 617-632.
doi: 10.1016/S0378-3758(02)00112-X
2001
He Y., Xu X.-M., Tobutt K.R. & Ridout M.S. (2001) POLYLINK: to support two-point linkage analysis in autotetraploids. Bioinformatics, 17, 740-741. doi: 10.1093/bioinformatics/17.8.740
Ridout M.S., Bell J.A. & Simpson D.W. (2001) Analysis of segregation data from selfed progeny of allopolyploids. Heredity, 87, 537-543. doi: 10.1046/j.1365-2540.2001.00938.x
Xu, X.-M. Xu & Ridout, M.S. (2001) Effects of prevailing wind direction on spatial statistics of plant disease epidemics. Journal of Phytopathology, 149, 155-166. doi: 10.1046/j.1439-0434.2001.00591.x
Cross, J.V. & Ridout, M.S. (2001) Emergence of blackcurrant gall mite (Cecidophyopsis ribis) from galls in spring. Journal of Horticultural Science and Biotechnology, 76, 311-319. doi: 10.1080/14620316.2001.11511369
Ridout M.S., Hinde J.P., & Demetrio C.G.B. (2001)
A score test for testing a zero-inflated Poisson regression model against
zero-inflated negative binomial alternatives.
Biometrics, 57, 219-223.
doi: 10.1111/j.0006-341X.2001.00219.x
Campbell C.A.M. & Ridout M.S. (2001) Effects of plant spacing and interplanting with oilseed rape on colonisation of dwarf hops by the damson-hop aphid, Phorodon humuli. Entomologica experimentalis et applicata, 99, 211-216. doi: 10.1046/j.1570-7458.2001.00819.x
2000
Ridout M.S. (2000) Improved estimation of the proportion of triploids in populations with diploid and triploid individuals. Journal of Heredity, 91, 57-60. doi: 10.1093/jhered/91.1.57
Ridout M.S. & Xu X.-M. (2000) Relationships between several
quadrat-based statistical measures used to characterize spatial
aspects of disease incidence data. Phytopathology,
90, 568-575.
doi: https://doi.org/10.1094/PHYTO.2000.90.6.568
[pdf]
White P.J., Pineros M., Tester M. & Ridout M.S. (2000) Cation permeability and selectivity of a root plasma membrane calcium channel. Journal of Membrane Biology, 174, 71-83. doi: 10.1007/s002320001033 [pdf]
Xu X.-M. & Ridout M.S. (2000) Effects of quadrat size and shape,
initial epidemic conditions, and spore dispersal gradient on
spatial statistics of plant disease epidemics. Phytopathology, 90, 737-750.
doi: 10.1094/PHYTO.2000.90.7.738
[pdf]
Xu X.-M. & Ridout M.S. (2000) Stochastic simulation of the spread of
race-specific and race-nonspecific aerial fungal pathogens in cultivar
mixtures. Plant Pathology, 49, 207-218.
doi: 10.1046/j.1365-3059.2000_t01-1-00444.x
[pdf]
Murray, R.A. and Cross, J.V. and Ridout, M.S. (2000)
The measurement of multiple spray deposits by sequential application of metal
chelate tracers. Annals of Applied Biology, 137, 245-252.
doi: 10.1111/j.1744-7348.2000.tb00065.x
1999
Ridout M.S. (1999) Memory in coal tits: an alternative model.
Biometrics, 55, 660-662.
doi: 10.1111/j.0006-341X.1999.00660.x
Ridout M.S. Demetrio C.G.B. & Firth D.(1999) Estimating intraclass
correlation for binary data. Biometrics, 55, 137-148.
(Correction Biometrics, 59, p. 199).
doi: 10.1111/j.0006-341X.1999.00137.x,
correction 10.1111/1541-0420.00025
Ridout M.S., Morgan B.J.T & Taylor D.R. (1999) Modelling variability in the branching structure of strawberry inflorescences. Applied Statistics, 48, 185-196. doi: 10.1111/1467-9876.00148 [web page]
White P.J. & Ridout M.S. (1999) An energy-barrier model for the permeation of monovalent and divalent cations through the maxi cation channel in the plasma membrane of rye roots. Journal of Membrane Biology, 168, 63-75. doi: 10.1007/s002329900498 [pdf]
1998
Ridout M.S., Faddy M.J., Jones G. & Campbell C.A.M. (1998) Markov models of mite movements. Applied Statistics, 47, 265-277. doi: 10.1111/1467-9876.00111
Ridout M.S., Tong S., Vowden S. & Tobutt K.R. (1998) Three-point linkage analysis in crosses of allogamous plant species. Genetical Research,72, 111-121. doi: 10.1017/S0016672398003371
White P.J. & Ridout M.S. (1998) The estimation of rapid rate-constants from current amplitude frequency distributions of single-channel recordings. Journal of Membrane Biology, 161, 115-129. doi: 10.1007/s002329900319 [pdf]
1997
Brooks S.P., Morgan B.J.T., Ridout M.S. & Pack S.E. (1997) Finite mixture models for proportions. Biometrics, 53, 1097-1115. doi: 10.2307/2533567
Ridout M.S. & Harris D.C. (1997) Estimating the concentration of
propagules of a plant pathogen from soil dilution plate counts when
the response is nonlinear. Applied Statistics, 46, 111-121.
doi: 10.1111/1467-9876.00050
[web page]
Ridout M.S. & Roberts S.J. (1997) Improving quality control procedures for seed-borne pathogens by testing sub-samples of seeds. Seed Science & Technology, 25, 195-202. [abstract]
Ridout M.S. & Suntheralingam N. (1997) Counting by weighing and its effect on seed testing procedures. Annals of Applied Biology, 130, 179-185. doi: 10.1111/j.1744-7348.1997.tb05793.x